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Return haplotype IDs

Source: R/class_all_generics.R, R/class_haplotype_graph.R, R/class_phg_dataset.R
readHapIds.Rd

Gets haplotype ID for given samples and reference ranges from a HaplotypeGraph

Usage

readHapIds(object, ...)

# S4 method for class 'HaplotypeGraph'
readHapIds(object, nThreads = 2)

# S4 method for class 'PHGDataSet'
readHapIds(object)

Arguments

object

an rPHG2 local or server connection object

...

Additional arguments, for use in specific methods

nThreads

Number of threads to use for JVM evaluation. Defaults to 2.