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Generate dot plots

Source: R/class_all_generics.R, R/class_phg_metrics.R
plotDot.Rd

Generates collinearity (dot) plots between 2 samples

Usage

plotDot(object, ...)

# S4 method for class 'PHGMetrics'
plotDot(
  object,
  metricId = NULL,
  querySeqId = NULL,
  refSeqId = NULL,
  queryLab = NULL,
  refLab = NULL,
  colorId = c("strand", "score")
)

Arguments

object

an rPHG2 metrics object

...

Additional arguments, for use in specific methods

metricId

A valid metric ID character name.

querySeqId

Vector of sequence IDs (query).

refSeqId

Vector of sequence IDs (reference).

queryLab

Optional label for query axis.

refLab

Optional label for reference axis.

colorId

How to color plots (strand or score)